Life Sciences

• 

  Xome-Blender-A Novel Cancer Genome Simulator

  • Published on: April, 2018
  • A. Magi, R. Semeraro, Valerio Orlandini
  • Code Available

  Xome-Blender is a collection of python and R scripts based on SAMtools functions that allows to generate synthetic cancer genomes with user defined fe ...

• 

  NanoSim-Nanopore Sequence read Simulator

  • Published on: April, 2017
  • Inanç Birol , René L Warren, Justin Chu, Chen Yang
  • Code Available

  NanoSim is a nanopore sequence read simulator based on statistical characterization. It is a fast and scalable read simulator that captures the techno ...

• 

  GapPredict- A Language Model for Resolving Gaps in Draft Genome Assemblies

  • Published on: May, 2021
  • Inanc Birol, Jessica Zhang, Eric Chen, Justin Chu, René L. Warren
  • Code Available

  GapPredict is a tool that uses a character-level language model to predict unresolved nucleotides in gaps when de novo assembly algorithms cannot reco ...

• 

  Data Shapley-Equitable Valuation of Data for Machine Learning

  • Published on: June, 2019
  • James Zou, Amirata Ghorbani
  • Code Available

  In healthcare markets, it has been suggested that individuals should be compensated for the data that they generate, but equitable valuation for indiv ...