Synthetic Data Generation

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  Xome-Blender-A Novel Cancer Genome Simulator

  • Published on: April, 2018
  • A. Magi, R. Semeraro, Valerio Orlandini
  • Code Available

  Xome-Blender is a collection of python and R scripts based on SAMtools functions that allows to generate synthetic cancer genomes with user defined fe ...

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  Differentially Private Synthetic Data-Applied Evaluations and Enhancements

  • Published on: March, 2020
  • Samira Pouyanfar, Anuj Desai, Eduardo de Leon, Joshua Allen, Lucas Rosenblatt, Xiaoyan Liu
  • Code Available

  When collecting sensitive information from groups or organization, it is highly important to maintain an individual's privacy. A formalization of priv ...

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  NanoSim-Nanopore Sequence read Simulator

  • Published on: April, 2017
  • Inanç Birol , René L Warren, Justin Chu, Chen Yang
  • Code Available

  NanoSim is a nanopore sequence read simulator based on statistical characterization. It is a fast and scalable read simulator that captures the techno ...

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  Generating Multi-label Discrete Patient Records using Generative Adversarial Networks

  • Published on: January, 2018
  • Siddharth Biswal, Edward Choi, Walter F. Stewart, Bradley Malin, Jimeng Sun, Jon Duke
  • Code Available

  Researchers have a controlled access to the Electronic Health Records (EHR) data as it is composed of personal identifiers and sensitive medical info ...

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  GapPredict- A Language Model for Resolving Gaps in Draft Genome Assemblies

  • Published on: May, 2021
  • Inanc Birol, Jessica Zhang, Eric Chen, Justin Chu, René L. Warren
  • Code Available

  GapPredict is a tool that uses a character-level language model to predict unresolved nucleotides in gaps when de novo assembly algorithms cannot reco ...

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  Fetal ECG Extraction from Maternal ECG using Attention based Cycle GAN

  • Published on: January, 2021
  • A., Mohebian, K.A., Wahid, K., M.R., S., Marateb, H.R. and Tavakolian, shahim Vedaei, Dinh
  • Code Available

  Non-invasive fetal electrocardiogram (FECG) is used to monitor the electrical pulse of the fetal heart. Decomposing the FECG signal from maternal ECG ...

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  RIDDLE-Race and Ethnicity Imputation From Disease History with Deep Learning

  • Published on: April, 2018
  • Xin Gao, Andrey Rzhetsky, Ji-Sung Kim
  • Code Available

  Electronic medical records that have been anonymized are becoming a more popular source of research data. However, these datasets frequently lack info ...

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  Synthesizing Filamentary Structured Images with GANs

  • Published on: June, 2017
  • Huiqi Li, Li Cheng, He Zhao
  • Code Available

  In this model a novel data-driven approach is used to synthesize filamentary structured images like retinal fundus images and neuronal images when gro ...

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  Generating Synthetic Training Data for Supervised De-Identification of Electronic Health Records

  • Published on: May, 2021
  • Christin Seifert, Jan Trienes, Claudia Alessandra Libbi, Dolf Trieschnigg
  • Code Available

  Synthetic data presents a promising solution to the privacy concern, if synthetic data has comparable utility to real data and if it preserves the pri ...

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  CorGAN-Correlation Capturing Convolutional Neural Networks for Generating Synthetic Healthcare Records

  • Published on: February, 2020
  • Edward A. Fox, Amirsina Torfi
  • Code Available

  In healthcare domain, researchers face a lot of privacy challenges when it comes to create a deep learning model using electronic health record (EHR) ...